{ "_id": "6ad7928a4b18b9008999a058", "Package": "brainloc", "Type": "Package", "Title": "Find Region Names and Coordinates for a Point on the Human Brain", "Version": "0.1.0", "Authors@R": "person(\"Tim\", \"Schäfer\", role = c(\"aut\", \"cre\"), email = \"ts+code@rcmd.org\", comment = c(ORCID = \"0000-0002-3683-8070\"))", "Maintainer": "Tim Schäfer ", "Description": "Given a point on the human brain, identify the closest\nbrain regions according to a brain atlas.", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "URL": "https://github.com/dfsp-spirit/brainloc", "BugReports": "https://github.com/dfsp-spirit/brainloc/issues", "Additional_repositories": "https://dfsp-spirit.r-universe.dev", "VignetteBuilder": "knitr", "Config/roxygen2/version": "8.0.0", "Config/pak/sysreqs": "libxml2-dev libssl-dev", "Repository": "https://dfsp-spirit.r-universe.dev", "Date/Publication": "2026-08-03 18:23:15 UTC", "RemoteUrl": "https://github.com/dfsp-spirit/brainloc", "RemoteRef": "v0.1.0", "RemoteSha": "9770ef0763a64c1bc7f163225938d5409e6a7199", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-20 16:05:10 UTC", "User": "root" }, "Author": "Tim Schäfer [aut, cre] (ORCID: )", "_user": "dfsp-spirit", "_type": "src", "_file": "brainloc_0.1.0.tar.gz", "_fileid": "https://r2.ropensci.org/d0cd6e19bc9007fd05ced0755fa22d11dfb5ead4f7be6e27230845dc95343f41", "_filesize": 1388203, "_sha256": "d0cd6e19bc9007fd05ced0755fa22d11dfb5ead4f7be6e27230845dc95343f41", "_expires": "2027-01-28T16:10:48.000Z", "_created": "2026-10-20T16:05:10.000Z", "_published": "2026-10-20T16:10:50.336Z", "_buildurl": "https://github.com/r-universe/dfsp-spirit/actions/runs/39453631217", "_status": "success", "_host": "GitHub-Actions", "_jobs": [ { "job": 118737173053, "time": 141, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "12279084559" }, { "job": 118737173150, "time": 177, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "12280071201" }, { "job": 118737172979, "time": 112, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "12280695561" }, { "job": 118737173131, "time": 120, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "12280380980" }, { "job": 118734855702, "time": 263, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "12279394056" }, { "job": 118737172957, "time": 126, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "12279444090" }, { "job": 118737173066, "time": 86, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "12280640233" }, { "job": 118737173265, "time": 94, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "12279970954" }, { "job": 118737172867, "time": 91, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "12280615254" } ], "_upstream": "https://github.com/dfsp-spirit/brainloc", "_commit": { "id": "9770ef0763a64c1bc7f163225938d5409e6a7199", "author": "Tim Schaefer ", "committer": "Tim Schaefer ", "message": "FIX: fix R CMD check issues\n", "time": 1785781395 }, "_maintainer": { "name": "Tim Schäfer", "email": "ts+code@rcmd.org", "login": "dfsp-spirit", "orcid": "0000-0002-3683-8070", "description": "Research Software Engineer at Max Planck Institute for Empirical Aesthetics", "uuid": 1061893 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "freesurferformats", "version": ">= 0.1.16", "role": "Imports" }, { "package": "Rvcg", "version": ">= 0.20.2", "role": "Imports" }, { "package": "collections", "role": "Imports" }, { "package": "pkgfilecache", "version": ">= 0.1.1", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "version": ">= 2.1.0", "role": "Suggests" }, { "package": "fsbrain", "version": ">= 0.5.0", "role": "Suggests" }, { "package": "rgl", "role": "Suggests" }, { "package": "regfusionr", "version": ">= 0.1.1", "role": "Suggests" } ], "_owner": "dfsp-spirit", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2026-32", "n": 8 } ], "_tags": [ { "name": "v0.1.0", "date": "2026-08-03" } ], "_topics": [ "atlas", "brain", "coordinate-systems", "distances", "freesurfer", "fsaverage", "mri", "neuroimaging" ], "_stars": 1, "_contributors": [ { "user": "dfsp-spirit", "count": 271, "uuid": 1061893 } ], "_userbio": { "uuid": 1061893, "type": "user", "name": "Tim Schäfer", "followers": 77, "description": "Research Software Engineer at Max Planck Institute for Empirical Aesthetics" }, "_downloads": { "count": 0, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/brainloc" }, "_devurl": "https://github.com/dfsp-spirit/brainloc", "_searchresults": 1, "_rbuild": "4.6.1", "_assets": [ "extra/brainloc.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/readme.html", "extra/readme.md", "LICENSE" ], "_cranurl": false, "_exports": [ "brainparc", "brainparc_fs", "brainparc_neighbors", "cluster_location_details", "cluster_peaks", "cluster_region_overlap", "clusterinfo", "clusterinfo_from_thresholded_overlay", "coord_closest_regions", "coord_closest_vertex", "coord_MNI152_to_talairach", "coord_MNI305_info", "coord_MNI305_to_MNI152", "fs_home", "get_clusters", "get_subjects_dir", "get_surface", "get_surface_coords", "get_talairach_label", "has_fs", "hemilist", "is.brainparc", "is.clusterinfo", "name_regions", "segmentation_centers", "vertex_closest_regions", "vertex_regions" ], "_help": [ { "page": "brainparc", "title": "Create a brain parcellation from custom data.", "topics": [ "brainparc" ] }, { "page": "brainparc_fs", "title": "Create a brain parcellation from a subject in a FreeSurfer recon-all output directory", "topics": [ "brainparc_fs" ] }, { "page": "brainparc_neighbors", "title": "Compute adjacency of surface parcellation (annot) regions.", "topics": [ "brainparc_neighbors" ] }, { "page": "cluster_location_details", "title": "Get details on cluster locations.", "topics": [ "cluster_location_details" ] }, { "page": "cluster_peaks", "title": "Compute cluster peaks.", "topics": [ "cluster_peaks" ] }, { "page": "cluster_region_overlap", "title": "Compute overlapping atlas regions for clusters.", "topics": [ "cluster_region_overlap" ] }, { "page": "clusterinfo", "title": "Create clusterinfo data structure from files or pre-loaded data.", "topics": [ "clusterinfo" ] }, { "page": "clusterinfo_from_thresholded_overlay", "title": "Create clusterinfo instance from thresholded per-vertex data overlays.", "topics": [ "clusterinfo_from_thresholded_overlay" ] }, { "page": "coord_closest_regions", "title": "Find closest regions to coordinate using Euclidean or geodesic distance.", "topics": [ "coord_closest_regions" ] }, { "page": "coord_closest_vertex", "title": "Find closest surface vertex to a point, using Euclidean distance.", "topics": [ "coord_closest_vertex" ] }, { "page": "coord_MNI152_to_talairach", "title": "Transform MNI152 coords to approximate Talairach space using Matthew Brett's approach.", "topics": [ "coord_MNI152_to_talairach" ] }, { "page": "coord_MNI305_info", "title": "Get info on MNI305 surface coordinate in various coordinate systems.", "topics": [ "coord_MNI305_info" ] }, { "page": "coord_MNI305_to_MNI152", "title": "Transform MNI305 coords (FreeSurfer fsaverage surface) to MNI152 coordinates.", "topics": [ "coord_MNI305_to_MNI152" ] }, { "page": "fs_home", "title": "Return FreeSurfer path.", "concept": [ "FreeSurfer helper functions" ], "topics": [ "fs_home" ] }, { "page": "get_clusters", "title": "Get the clusters from a clusterinfo instance.", "topics": [ "get_clusters" ] }, { "page": "get_subjects_dir", "title": "Find subjects_dir or stop.", "concept": [ "FreeSurfer helper functions" ], "topics": [ "get_subjects_dir" ] }, { "page": "get_surface", "title": "Extract the surface hemilist from a brainparc.", "concept": [ "brainparc accessors" ], "topics": [ "get_surface" ] }, { "page": "get_surface_coords", "title": "Extract the vertex coordinates from the brainparc surface.", "concept": [ "brainparc accessors" ], "topics": [ "get_surface_coords" ] }, { "page": "get_talairach_label", "title": "Retrieve Talairach labels for Talairach coordinates from 'talairach.org' files.", "topics": [ "get_talairach_label" ] }, { "page": "has_fs", "title": "Check whether a FreeSurfer installation can be found on the system.", "concept": [ "FreeSurfer helper functions" ], "topics": [ "has_fs" ] }, { "page": "hemilist", "title": "Create hemilist.", "concept": [ "hemilist functions" ], "topics": [ "hemilist" ] }, { "page": "is.brainparc", "title": "Check whether object is a brainparc instance.", "topics": [ "is.brainparc" ] }, { "page": "is.clusterinfo", "title": "Check whether x is a clusterinfo instance.", "topics": [ "is.clusterinfo" ] }, { "page": "name_regions", "title": "Get names of regions in labeled volume from color lookup table (colorLUT).", "topics": [ "name_regions" ] }, { "page": "print.brainparc", "title": "Print description of a brainparc instance (S3).", "topics": [ "print.brainparc" ] }, { "page": "segmentation_centers", "title": "Find center of mass of regions in a brain volume segmentation.", "topics": [ "segmentation_centers" ] }, { "page": "vertex_closest_regions", "title": "Find closest regions to vertex using Euclidean or geodesic distance.", "topics": [ "vertex_closest_regions" ] }, { "page": "vertex_regions", "title": "Find regions for vertices in all brainparc atlases.", "topics": [ "vertex_regions" ] } ], "_readme": "https://github.com/dfsp-spirit/brainloc/raw/v0.1.0/README.md", "_rundeps": [ "cli", "collections", "curl", "freesurferformats", "pkgfilecache", "rappdirs", "Rcpp", "RcppArmadillo", "RcppEigen", "rlang", "Rvcg", "xml2" ], "_vignettes": [ { "source": "brainloc.Rmd", "filename": "brainloc.html", "title": "brainloc", "engine": "knitr::rmarkdown", "headings": [ "About brainloc", "Preparation: Getting the data required to run the examples", "Using the template subjects from a local FreeSurfer installation", "Have the brainloc package download them for you from the internet", "Usage Examples Part I: Location information for a vertex or coordinate", "Creating a brainparc object", "Finding the vertex closest to a query coordinate", "Finding the MNI152 and Talairach coordinates for a point or vertex in MNI305 space", "Finding the brain atlas region a vertex belongs to, and the distance to all other brain atlas regions from the vertex", "Usage Examples Part II: Location information for a cluster" ], "created": "2021-12-02 13:23:31", "modified": "2021-12-14 16:20:38", "commits": 13 } ], "_score": 2.6989700043360187, "_indexed": true, "_nocasepkg": "brainloc", "_universes": [ "dfsp-spirit" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.1.0", "date": "2026-10-20T16:07:33.000Z", "distro": "resolute", "commit": "9770ef0763a64c1bc7f163225938d5409e6a7199", "fileid": "https://r2.ropensci.org/d7c74a221e3e3e4a2a6af63290dee5feed509f28a7e945df72109404b0f9de96", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/dfsp-spirit/actions/runs/39453631217" }, { "r": "4.6.1", "os": "linux", "version": "0.1.0", "date": "2026-10-20T16:08:07.000Z", "distro": "resolute", "commit": "9770ef0763a64c1bc7f163225938d5409e6a7199", "fileid": "https://r2.ropensci.org/ef4489177dd36604ce88c241a675a06b18f74914cf9c1f7db197653ebb9ede17", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/dfsp-spirit/actions/runs/39453631217" }, { "r": "4.5.3", "os": "mac", "version": "0.1.0", "date": "2026-10-20T16:10:06.000Z", "commit": "9770ef0763a64c1bc7f163225938d5409e6a7199", "fileid": "https://r2.ropensci.org/2b63c4a4eec2de05b9c1af4421e78503e4d900d4d4b2f7d1a0020f2ef3d5a91d", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/dfsp-spirit/actions/runs/39453631217" }, { "r": "4.6.1", "os": "mac", "version": "0.1.0", "date": "2026-10-20T16:10:16.000Z", "commit": "9770ef0763a64c1bc7f163225938d5409e6a7199", "fileid": "https://r2.ropensci.org/72c9b61e011692849f16ebe30ef1d101f542dff571d71d1f30a1a17e01586177", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/dfsp-spirit/actions/runs/39453631217" }, { "r": "4.6.0", "os": "wasm", "version": "0.1.0", "date": "2026-10-20T16:07:35.000Z", "commit": "9770ef0763a64c1bc7f163225938d5409e6a7199", "fileid": "https://r2.ropensci.org/295052a53737c297d5502fdddc03c6c7900f645ea51c76d9becc82819a00c774", "status": "success", "buildurl": "https://github.com/r-universe/dfsp-spirit/actions/runs/39453631217" }, { "r": "4.7.0", "os": "win", "version": "0.1.0", "date": "2026-10-20T16:06:33.000Z", "commit": "9770ef0763a64c1bc7f163225938d5409e6a7199", "fileid": "https://r2.ropensci.org/bf35cac136966005bcd580569e9f3448b5b7750feaa4e1a8fa26c13741563bf5", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/dfsp-spirit/actions/runs/39453631217" }, { "r": "4.5.3", "os": "win", "version": "0.1.0", "date": "2026-10-20T16:06:39.000Z", "commit": "9770ef0763a64c1bc7f163225938d5409e6a7199", "fileid": "https://r2.ropensci.org/424a6ed75f0aeaf10b1254e7d07b8eb44645a2dcf4c679111a0c6e50cedaa4a3", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/dfsp-spirit/actions/runs/39453631217" }, { "r": "4.6.1", "os": "win", "version": "0.1.0", "date": "2026-10-20T16:06:35.000Z", "commit": "9770ef0763a64c1bc7f163225938d5409e6a7199", "fileid": "https://r2.ropensci.org/9906579e86632ca533afab7783cb79c4a2b5067d84b89b2dbad21469c67a41c7", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/dfsp-spirit/actions/runs/39453631217" } ] }